I have the latest v31/fixes and that does have the "Remove duplicates" option. However, if the option is not present in the MythCenter-wide Channel Scan page then the option should also not be activated.
Just in case, try updating your mythtv version to the latest v31/fixes by using the mythbuntu ppa. This is described here:
viewtopic.php?f=36&t=4453&p=22115&hilit=ppa#p22115
See also the Mythbuntu Control Panel which is now an Ubuntu application to deal with MythTV system configuration:
viewtopic.php?f=29&t=4483&p=22163&hilit=mcp#p22163
You can capture the output of a mythtv-setup channel scan like this:
mythtv-setup -v channel,chanscan 2>&1 | tee ms-20210629-2050.log
and post the log file (possibly gzipped) here, or on pastebin or on gmail.
This will have information about all channels found, about which transports are removed as being duplicates, and which channels are kept.
This has likely enough information to decide on a follow-up action, e.g. exactly which QAM channels to scan to end up with the channels you want.